PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020805001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 837aa    MW: 92418.8 Da    PI: 6.9301
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020805001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  GSVIVT01020805001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI-- 215
                        99*****************************96555555..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  GSVIVT01020805001 216 WNEKNQLLLGIRRA 229
                        8899999****997 PP

2Auxin_resp121.46.9e-40254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GSVIVT01020805001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                        79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48114257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-42119243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-22127228No hitNo description
PROSITE profilePS5086313.056128230IPR003340B3 DNA binding domain
SMARTSM010192.4E-25128230IPR003340B3 DNA binding domain
PfamPF023621.1E-22128229IPR003340B3 DNA binding domain
PfamPF065079.6E-35254337IPR010525Auxin response factor
SuperFamilySSF542774.05E-7671754No hitNo description
PfamPF023092.5E-5675762IPR033389AUX/IAA domain
PROSITE profilePS5174522.245680764IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MRLSSSGFAH QTEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEV CLLPAELGSP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTIMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS ALPSFHAHKD GDMSINSPLM WLRGDIGDQG IQSLNFQGYG  420
LTPWMQPRLD ASMLGLQSNM QQAIAAASLQ ELRALDPSKH PAQSLLQFQQ PQNVSNSPAS  480
VFRGQIFCNN SCRLSDQQHI PKVISALSQL SSPTQSLPPS LQTIPSPIQQ QIFPDSVGNP  540
ITTSDVSTMQ SLLGSFSQDG TSHLLNLHGS NPVISSSAFF PKQVAVEPPL PSGTTQCVLP  600
QVEELATPPS NASELSTLLP PFPGRDENDS VSMPFSTPNF ANAPGTDFPL NSDMTTSSCI  660
DESGFLQSSE NLEQVNPPTR TFVKVHKLGS FGRSLDITKF SSYDELRGEL GRMFGLEGRL  720
EDPLRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EGINVPNPIP  780
SHRISNSGNS WLGQVARVAK VEGGQMIFRF QAVPTLCDLV AAKSFHLSIR NPTCSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611635847388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446840.10.0hypothetical protein CICLE_v10014200mg
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLV4U7I50.0V4U7I5_9R
STRINGGLYMA02G45100.10.0(Glycine max)
STRINGGLYMA14G03650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6